Tobias Jakobi

Latest

• Circular RNAs
• circtools
• CTS 505 - Introduction to Bioinformatics
• SARUMAN
• Translating Translation: Protein-Coding CircRNAs as Potential Therapeutical Targets in Coronary Artery Disease
• Transient Inhibition of Translation Improves Cardiac Function After Ischemia/Reperfusion by Attenuating the Inflammatory Response
• ATF6 protects against protein misfolding during cardiac hypertrophy
• State-of-the-Art Circular RNA Analytics Using the Circtools Software Suite
• Large-scale benchmarking of circRNA detection tools reveals large differences in sensitivity but not in precision
• Transcriptional Effects of Candidate COVID-19 Treatments on Cardiac Myocytes
• Increased susceptibility of human endothelial cells to infections by SARS-CoV-2 variants
• ADAR-deficiency perturbs the global splicing landscape in mouse tissues
• Deep Characterization of Circular RNAs from Human Cardiovascular Cell Models and Cardiac Tissue
• Proteomic analysis of the cardiac myocyte secretome reveals extracellular protective functions for the ER stress response
• ATF6 Regulates Cardiac Hypertrophy by Transcriptional Induction of the mTORC1 Activator, Rheb
• circtools—a one-stop software solution for circular RNA research
• Computational approaches for circular RNA analysis
• Early Response of Sulfolobus acidocaldarius to Nutrient Limitation
• Identification of Methylated Transcripts Using the TRIBE Approach
• Monitoring Cell Type-Specific Gene Expression Using Ribosome Profiling In Vivo During Cardiac Hemodynamic Stress
• Deep computational circular RNA analytics from RNA-seq data
• Comparison of Acceleration Techniques for Selected Low-Level Bioinformatics Operations
• Profiling and Validation of the Circular RNA Repertoire in Adult Murine Hearts
• Integrin-linked kinase regulates the niche of quiescent epidermal stem cells
• Discovery of transcription start sites in the Chinese hamster genome by next-generation RNA sequencing
• Bioinformatic methods for eukaryotic RNA-Seq-based promoter identification
• Large-scale compression of genomic sequence databases with the Burrows-Wheeler transform
• Computational identification of microRNA gene loci and precursor microRNA sequences in CHO cell lines
• Comparing DNA Sequence Collections by Direct Comparison of Compressed Text Indexes
• Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing
• Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming
• Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
• TRUNCATULIX--a data warehouse for the legume community